feat: Complete sync of all Claude Code CLI upgrades

- Add all 21 commands (clawd, ralph, prometheus*, dexto*)
- Add all hooks (intelligent-router, clawd-*, prometheus-wrapper, unified-integration-v2)
- Add skills (ralph, prometheus master)
- Add MCP servers (registry.json, manager.sh)
- Add plugins directory with marketplaces
- Add health-check.sh and aliases.sh scripts
- Complete repository synchronization with local ~/.claude/

Total changes: 100+ new files added
All integrations now fully backed up in repository

🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>

mcp-servers/registry.json

@@ -0,0 +1,97 @@
+{
+  "version": "1.0.0",
+  "last_updated": "2026-01-27T00:00:00Z",
+  "servers": {
+    "arc": {
+      "name": "ARC Protocol MCP",
+      "description": "Subagent file operations and protocol implementation",
+      "command": "python3",
+      "args": ["/home/roman/.claude/ralph-integration/arc/.agent/mcp/arc_mcp_server.py"],
+      "enabled": true,
+      "category": "core"
+    },
+    "claude-mem": {
+      "name": "Claude Memory",
+      "description": "Persistent memory and context management for Claude",
+      "command": "node",
+      "args": ["/home/roman/.claude/plugins/cache/thedotmack/claude-mem/plugin/scripts/mcp-server.cjs"],
+      "enabled": true,
+      "category": "memory"
+    },
+    "github": {
+      "name": "GitHub MCP",
+      "description": "GitHub API integration for repository operations",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-github"],
+      "enabled": false,
+      "category": "external",
+      "requires_auth": true
+    },
+    "filesystem": {
+      "name": "Filesystem MCP",
+      "description": "Local filesystem access and operations",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-filesystem", "/home/roman"],
+      "enabled": true,
+      "category": "core"
+    },
+    "git": {
+      "name": "Git MCP",
+      "description": "Git operations and repository management",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-git"],
+      "enabled": true,
+      "category": "core"
+    },
+    "brave-search": {
+      "name": "Brave Search MCP",
+      "description": "Web search via Brave Search API",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-brave-search"],
+      "enabled": false,
+      "category": "external",
+      "requires_auth": true
+    },
+    "postgres": {
+      "name": "PostgreSQL MCP",
+      "description": "PostgreSQL database operations",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-postgres"],
+      "enabled": false,
+      "category": "database",
+      "requires_connection_string": true
+    },
+    "sqlite": {
+      "name": "SQLite MCP",
+      "description": "SQLite database operations",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-sqlite", "--db-path", "/home/roman/.claude/mcp-servers/data.db"],
+      "enabled": true,
+      "category": "database"
+    },
+    "puppeteer": {
+      "name": "Puppeteer MCP",
+      "description": "Browser automation and web scraping",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-puppeteer"],
+      "enabled": false,
+      "category": "automation"
+    },
+    "fetch": {
+      "name": "Fetch MCP",
+      "description": "HTTP requests and web API integration",
+      "command": "npx",
+      "args": ["-y", "@modelcontextprotocol/server-fetch"],
+      "enabled": true,
+      "category": "network"
+    }
+  },
+  "categories": {
+    "core": "Essential MCP servers for basic functionality",
+    "memory": "Persistent memory and context management",
+    "external": "Third-party API integrations",
+    "database": "Database connectivity and operations",
+    "automation": "Task automation and scripting",
+    "network": "Network and HTTP operations"
+  }
+}