Reorganize: Move all skills to skills/ folder

- Created skills/ directory
- Moved 272 skills to skills/ subfolder
- Kept agents/ at root level
- Kept installation scripts and docs at root level

Repository structure:
- skills/           - All 272 skills from skills.sh
- agents/           - Agent definitions
- *.sh, *.ps1       - Installation scripts
- README.md, etc.   - Documentation

Co-Authored-By: Claude <noreply@anthropic.com>

skills/codex/skill.md

@@ -0,0 +1,66 @@
+---
+name: codex
+description: Use when the user asks to run Codex CLI (codex exec, codex resume) or references OpenAI Codex for code analysis, refactoring, or automated editing. Uses GPT-5.2 by default for state-of-the-art software engineering.
+---
+
+# Codex Skill Guide
+
+## Running a Task
+1. Default to `gpt-5.2` model. Ask the user (via `AskUserQuestion`) which reasoning effort to use (`xhigh`,`high`, `medium`, or `low`). User can override model if needed (see Model Options below).
+2. Select the sandbox mode required for the task; default to `--sandbox read-only` unless edits or network access are necessary.
+3. Assemble the command with the appropriate options:
+   - `-m, --model <MODEL>`
+   - `--config model_reasoning_effort="<high|medium|low>"`
+   - `--sandbox <read-only|workspace-write|danger-full-access>`
+   - `--full-auto`
+   - `-C, --cd <DIR>`
+   - `--skip-git-repo-check`
+3. Always use --skip-git-repo-check.
+4. When continuing a previous session, use `codex exec --skip-git-repo-check resume --last` via stdin. When resuming don't use any configuration flags unless explicitly requested by the user e.g. if he species the model or the reasoning effort when requesting to resume a session. Resume syntax: `echo "your prompt here" | codex exec --skip-git-repo-check resume --last 2>/dev/null`. All flags have to be inserted between exec and resume.
+5. **IMPORTANT**: By default, append `2>/dev/null` to all `codex exec` commands to suppress thinking tokens (stderr). Only show stderr if the user explicitly requests to see thinking tokens or if debugging is needed.
+6. Run the command, capture stdout/stderr (filtered as appropriate), and summarize the outcome for the user.
+7. **After Codex completes**, inform the user: "You can resume this Codex session at any time by saying 'codex resume' or asking me to continue with additional analysis or changes."
+
+### Quick Reference
+| Use case | Sandbox mode | Key flags |
+| --- | --- | --- |
+| Read-only review or analysis | `read-only` | `--sandbox read-only 2>/dev/null` |
+| Apply local edits | `workspace-write` | `--sandbox workspace-write --full-auto 2>/dev/null` |
+| Permit network or broad access | `danger-full-access` | `--sandbox danger-full-access --full-auto 2>/dev/null` |
+| Resume recent session | Inherited from original | `echo "prompt" \| codex exec --skip-git-repo-check resume --last 2>/dev/null` (no flags allowed) |
+| Run from another directory | Match task needs | `-C <DIR>` plus other flags `2>/dev/null` |
+
+## Model Options
+
+| Model | Best for | Context window | Key features |
+| --- | --- | --- | --- |
+| `gpt-5.2-max` | **Max model**: Ultra-complex reasoning, deep problem analysis | 400K input / 128K output | 76.3% SWE-bench, adaptive reasoning, $1.25/$10.00 |
+| `gpt-5.2` ⭐ | **Flagship model**: Software engineering, agentic coding workflows | 400K input / 128K output | 76.3% SWE-bench, adaptive reasoning, $1.25/$10.00 |
+| `gpt-5.2-mini` | Cost-efficient coding (4x more usage allowance) | 400K input / 128K output | Near SOTA performance, $0.25/$2.00 |
+| `gpt-5.1-thinking` | Ultra-complex reasoning, deep problem analysis | 400K input / 128K output | Adaptive thinking depth, runs 2x slower on hardest tasks |
+
+**GPT-5.2 Advantages**: 76.3% SWE-bench (vs 72.8% GPT-5), 30% faster on average tasks, better tool handling, reduced hallucinations, improved code quality. Knowledge cutoff: September 30, 2024.
+
+**Reasoning Effort Levels**:
+- `xhigh` - Ultra-complex tasks (deep problem analysis, complex reasoning, deep understanding of the problem)
+- `high` - Complex tasks (refactoring, architecture, security analysis, performance optimization)
+- `medium` - Standard tasks (refactoring, code organization, feature additions, bug fixes)
+- `low` - Simple tasks (quick fixes, simple changes, code formatting, documentation)
+
+**Cached Input Discount**: 90% off ($0.125/M tokens) for repeated context, cache lasts up to 24 hours.
+
+## Following Up
+- After every `codex` command, immediately use `AskUserQuestion` to confirm next steps, collect clarifications, or decide whether to resume with `codex exec resume --last`.
+- When resuming, pipe the new prompt via stdin: `echo "new prompt" | codex exec resume --last 2>/dev/null`. The resumed session automatically uses the same model, reasoning effort, and sandbox mode from the original session.
+- Restate the chosen model, reasoning effort, and sandbox mode when proposing follow-up actions.
+
+## Error Handling
+- Stop and report failures whenever `codex --version` or a `codex exec` command exits non-zero; request direction before retrying.
+- Before you use high-impact flags (`--full-auto`, `--sandbox danger-full-access`, `--skip-git-repo-check`) ask the user for permission using AskUserQuestion unless it was already given.
+- When output includes warnings or partial results, summarize them and ask how to adjust using `AskUserQuestion`.
+
+## CLI Version
+
+Requires Codex CLI v0.57.0 or later for GPT-5.2 model support. The CLI defaults to `gpt-5.2` on macOS/Linux and `gpt-5.2` on Windows. Check version: `codex --version`
+
+Use `/model` slash command within a Codex session to switch models, or configure default in `~/.codex/config.toml`.