Reorganize: Move all skills to skills/ folder

- Created skills/ directory - Moved 272 skills to skills/ subfolder - Kept agents/ at root level - Kept installation scripts and docs at root level Repository structure: - skills/ - All 272 skills from skills.sh - agents/ - Agent definitions - *.sh, *.ps1 - Installation scripts - README.md, etc. - Documentation Co-Authored-By: Claude <noreply@anthropic.com>
2026-01-23 18:05:17 +00:00
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+---
+name: drugbank-search
+description: Search DrugBank comprehensive drug database with natural language queries. Drug mechanisms, interactions, and safety data powered by Valyu.
+keywords:
+  - drugbank
+  - drugs
+  - pharmacology
+  - drug-interactions
+  - adverse-reactions
+  - semantic-search
+license: MIT
+---
+
+
+# DrugBank Search
+
+Search the complete DrugBank database of drug information including mechanisms of action, interactions, targets, and pharmacology using natural language queries powered by Valyu's semantic search API.
+
+## Why This Skill is Powerful
+
+- **No API Parameter Parsing**: Just pass natural language queries directly - no need to construct complex search parameters
+- **Semantic Search**: Understands the meaning of your query, not just keyword matching
+- **Full-Text Access**: Returns complete drug information including mechanisms, interactions, and targets
+- **Image Links**: Includes molecular structures and data visualizations
+- **Comprehensive Coverage**: Access to all DrugBank drug data
+
+## Requirements
+
+1. Node.js 18+ (uses built-in fetch)
+2. Valyu API key from https://platform.valyu.ai ($10 free credits)
+
+## CRITICAL: Script Path Resolution
+
+The `scripts/search` commands in this documentation are relative to this skill's installation directory.
+
+Before running any command, locate the script using:
+
+```bash
+DRUGBANK_SCRIPT=$(find ~/.claude/plugins/cache -name "search" -path "*/drugbank-search/*/scripts/*" -type f 2>/dev/null | head -1)
+```
+
+Then use the full path for all commands:
+```bash
+$DRUGBANK_SCRIPT "ACE inhibitors" 15
+```
+
+## API Key Setup Flow
+
+When you run a search and receive `"setup_required": true`, follow this flow:
+
+1. **Ask the user for their API key:**
+   "To search DrugBank, I need your Valyu API key. Get one free ($10 credits) at https://platform.valyu.ai"
+
+2. **Once the user provides the key, run:**
+   ```bash
+   scripts/search setup <api-key>
+   ```
+
+3. **Retry the original search.**
+
+## When to Use This Skill
+
+- Comprehensive drug information lookup
+- Drug interactions and side effects research
+- Target identification and validation
+- Mechanism of action studies
+- Pharmacokinetics and pharmacodynamics research
+- Drug metabolism and adverse event data
+## Output Format
+
+```json
+{
+  "success": true,
+  "type": "drugbank_search",
+  "query": "ACE inhibitors",
+  "result_count": 10,
+  "results": [
+    {
+      "title": "Drug Name",
+      "url": "https://drugbank.com/...",
+      "content": "Drug information, mechanism, interactions...",
+      "source": "drugbank",
+      "relevance_score": 0.95,
+      "images": ["https://example.com/structure.png"]
+    }
+  ],
+  "cost": 0.025
+}
+```
+
+## Processing Results
+
+### With jq
+
+```bash
+# Get drug names
+scripts/search "query" 10 | jq -r '.results[].title'
+
+# Get URLs
+scripts/search "query" 10 | jq -r '.results[].url'
+
+# Extract full content
+scripts/search "query" 10 | jq -r '.results[].content'
+```
+
+## Common Use Cases
+
+### Drug Information
+
+```bash
+# Find drug details
+scripts/search "metformin pharmacokinetics" 50
+```
+
+### Drug Interactions
+
+```bash
+# Search for interactions
+scripts/search "CYP3A4 inhibitor drug interactions" 20
+```
+
+### Mechanism Research
+
+```bash
+# Find mechanism data
+scripts/search "selective serotonin reuptake inhibitors mechanism" 15
+```
+
+### Target Identification
+
+```bash
+# Search for drug targets
+scripts/search "drugs targeting BCR-ABL fusion protein" 25
+```
+
+
+## Error Handling
+
+All commands return JSON with `success` field:
+
+```json
+{
+  "success": false,
+  "error": "Error message"
+}
+```
+
+Exit codes:
+- `0` - Success
+- `1` - Error (check JSON for details)
+
+## API Endpoint
+
+- Base URL: `https://api.valyu.ai/v1`
+- Endpoint: `/search`
+- Authentication: X-API-Key header
+
+## Architecture
+
+```
+scripts/
+├── search          # Bash wrapper
+└── search.mjs      # Node.js CLI
+```
+
+Direct API calls using Node.js built-in `fetch()`, zero external dependencies.
+
+## Adding to Your Project
+
+If you're building an AI project and want to integrate DrugBank Search directly into your application, use the Valyu SDK:
+
+### Python Integration
+
+```python
+from valyu import Valyu
+
+client = Valyu(api_key="your-api-key")
+
+response = client.search(
+    query="your search query here",
+    included_sources=["valyu/valyu-drugbank"],
+    max_results=20
+)
+
+for result in response["results"]:
+    print(f"Title: {result['title']}")
+    print(f"URL: {result['url']}")
+    print(f"Content: {result['content'][:500]}...")
+```
+
+### TypeScript Integration
+
+```typescript
+import { Valyu } from "valyu-js";
+
+const client = new Valyu("your-api-key");
+
+const response = await client.search({
+  query: "your search query here",
+  includedSources: ["valyu/valyu-drugbank"],
+  maxResults: 20
+});
+
+response.results.forEach((result) => {
+  console.log(`Title: ${result.title}`);
+  console.log(`URL: ${result.url}`);
+  console.log(`Content: ${result.content.substring(0, 500)}...`);
+});
+```
+
+See the [Valyu docs](https://docs.valyu.ai) for full integration examples and SDK reference.